Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq129 109 4e-19 >seq129 Length=2407505 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||| | ||| || || ||||| || || ||||| || || | | ||| || | Sbjct 239726 CGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 239667 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | |||| || ||||| || || ||||| ||||| ||| Sbjct 239666 TCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 239607 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| |||| | |||||| | || || ||||| || || Sbjct 239606 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 239547 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| | ||| || || || ||||||||||| Sbjct 239546 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 239509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385190946338538