Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq47 104 2e-17 >seq47 Length=4964275 Score = 104 bits (114), Expect = 2e-17 Identities = 130/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAAC-TGCC 21183 ||||||||||| || | || |||||||| ||| | |||||| |||||| | ||| |||| Sbjct 586213 AGCATTTGGGGACCAACGTGTGATGGCTTGGATCGGATTGTTGAGCGGT-TCAACATGCC 586271 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 ||||| ||||| || |||||| || | |||||||||||||| || || | || ||| Sbjct 586272 CGAGCTGCAAGTTGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATA-CTGTCGCAG 586330 Query 21244 C-TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | |||| || || || || |||| | |||| || |||||||| || ||| Sbjct 586331 CAGCTTCTACTTTCAATGGATTCCAGAGGCCAACAATACACTATGTGATGTCA 586383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463510729782240