Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq34 95.1 2e-14 >seq34 Length=6428186 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || ||||| ||||| || ||||| || || Sbjct 1196991 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCATGTCTATTTATATTGATTGTCCTTT 1196932 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || ||||||| Sbjct 1196931 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 1196872 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 1196871 TAACTTCTACTATCGGACATATAAG 1196847 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || |||||||| ||||| ||||| | ||||| ||||| |||||||| | |||||||| Sbjct 1197620 GCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 1197561 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 |||| || ||||| | || ||| | || || | |||||||| || || | || ||| Sbjct 1197560 TTGGCAGCTTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTGACCATA 1197501 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 1197500 TTGCAATTGGTA 1197489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903343240892480