Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq129 141 9e-29
seq586 96.9 3e-15
>seq129
Length=2407505
Score = 141 bits (156), Expect = 9e-29
Identities = 156/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || |||||||| || ||||| || || || | | | ||||||||||
Sbjct 239943 ATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCCTCGAGCT 239885
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || |||| ||||||||| |||||||||||||||||||| |||||
Sbjct 239884 GCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCT 239825
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| |||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| |
Sbjct 239824 TGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAG 239765
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 239764 TCAGGGTCTTGACGAAGATCTGCAT 239740
Score = 123 bits (136), Expect = 2e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| || | || |||| ||||||||| ||||||||||||||||||
Sbjct 240122 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 240063
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||||| ||||||| || || | ||||| |
Sbjct 240062 TCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACTTCAAGGGTGATG 240003
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| ||||| ||||| || || || || |||||||||
Sbjct 240002 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 239967
Score = 120 bits (132), Expect = 3e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| || || || | | | || |||||||
Sbjct 239715 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCGAGCT 239657
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || |||| ||||||||| || || ||||| |||||||| |||||
Sbjct 239656 GCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 239597
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | |||| ||||| ||||||| || || | ||||| ||| ||||| |
Sbjct 239596 TGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAG 239537
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 239536 TCAGGGTCTTGACGAAGATCTGCAT 239512
>seq586
Length=108663
Score = 96.9 bits (106), Expect = 3e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558
||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || ||
Sbjct 95831 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 95772
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618
|||||||| || |||||| || ||| |||||| || ||| |||| ||| |
Sbjct 95771 CCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGAGCCTCGGCGCTCTCGAA 95712
Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678
|| | |||| | | | || ||||| || |||||||| ||||| | ||||||||||||
Sbjct 95711 GGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCAATGGGCCG 95652
Query 148679 GTG 148681
|||
Sbjct 95651 GTG 95649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483384434670320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |