Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq113 170 2e-37 seq99 120 4e-22 >seq113 Length=2083070 Score = 170 bits (188), Expect = 2e-37 Identities = 574/886 (65%), Gaps = 27/886 (3%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || |||| ||| || |||| | ||||| || | ||||| | Sbjct 2059353 TCAAACTTATTAGCAAACAAGTGGTG---GTTCCGTAGCATCCAGTTCAAGTCCCCTACT 2059297 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || ||||| || || | ||| || || |||||||| || || | || || | | Sbjct 2059296 CCAAAAACACACACAGAGCGGATGTGAACTCCACTGCACGGTGGGTAGGGCGCACCTTTG 2059237 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 2059236 GACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGGGCATTCATGTCAGAA 2059177 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||||||||||| | || || | | || || || || | || | |||||| | || Sbjct 2059176 ACGTCGTACTTGT-CGCTGGAAGAAAACGCGCCTGGGACTTCAGGGATTCTCTGAATTGT 2059118 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCC----- 162414 |||||||||| || ||||| || || || || |||| |||||| ||||||| | Sbjct 2059117 TGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACTTCAGTAT 2059058 Query 162415 CTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 | | ||||| | ||| | | | | || || |||| | || | ||| || || Sbjct 2059057 TTTGCTGTTTTCTAGTACATATTCT-----ACAAAGCTCCTGCTAACTACAAAATAGGCA 2059003 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || |||||||| || || | | | ||| || | | ||||||| || ||||| | Sbjct 2059002 CTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTT 2058943 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | || || | | | | || ||| ||||||| ||| | ||| || || Sbjct 2058942 ATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCT----TACTTCTTTGTAAACAGG 2058887 Query 162595 ----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 | ||| || || | ||||| |||| | ||| || | | || || || Sbjct 2058886 CATTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTC 2058827 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 |||||||| | |||||||| | || || || || || | |||||||| || Sbjct 2058826 CTTGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGA 2058767 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || || | ||||| | | ||||| | || ||||| || | |||||||| || Sbjct 2058766 ACTTCTTCTATGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCACGAAGC 2058707 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 || || || ||||| ||| ||| | ||||||||| || ||||| || ||||| || Sbjct 2058706 ATATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCC 2058647 Query 162831 CATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888 | |||| | ||| | || || | |||| | ||||| || | |||||| | | Sbjct 2058646 CTTCACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGAATGCAGTAAAAA 2058589 Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948 ||||| || || ||||| | || || | ||| || | |||||| || || || | ||| Sbjct 2058588 TTCTGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACC 2058529 Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || ||| |||||||| Sbjct 2058528 ACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTACTGAGAG 2058483 >seq99 Length=3178465 Score = 120 bits (132), Expect = 4e-22 Identities = 235/342 (69%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| ||||||||||||||| || || | || ||| | | | | Sbjct 230237 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAGCGCCA--TGGCACAG 230180 Query 162715 AG-TCCGTAC-AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || | | || ||||| | ||||| || |||||||| || || ||| || || | Sbjct 230179 GGCTCTGCAGGAGGTCCTGCATGCAGTTGAGGTCGGCCTGCACCCGGGACCAGGAGGCAT 230120 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || ||||| |||| | |||| || ||||||||| ||| || | | | || || Sbjct 230119 AGACCACGCTTTCCAGGCGGCTGGCCACGAAGACATTGGGGAAGCAGGCAGCAATGGCCC 230060 Query 162833 TCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 |||||||| ||| | | || | ||| || ||||| || |||||||| | || Sbjct 230059 TCACGGCCTCCTGGAAGGCGGCCGGG--GATTTGCTGTCTACATGGACGCAGTAAACGTT 230002 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 ||| |||||||||| || || ||| | | ||| ||||| || || || ||||| | | Sbjct 230001 CTGGGGGGCGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGATTTTGTGGTGGATGAT 229942 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || || ||||||||||| ||||||| | ||||| Sbjct 229941 CATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 229900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578388487452800