Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq586 96.9 3e-15 seq129 86.0 6e-12 >seq586 Length=108663 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 80837 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 80778 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 |||| |||| ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 80777 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 80725 >seq129 Length=2407505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || ||||||||||| | |||||| |||||| ||||| || || | Sbjct 240163 TTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAG 240104 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | ||| || || ||||| |||||||| || || || || || | Sbjct 240103 CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 240044 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||| || | ||||| ||||| | || | || || |||||||| || | Sbjct 240043 CATTTTCAATAGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCT 239984 Query 132108 TTATGAAAATCTGCATG 132124 | | || ||||||||| Sbjct 239983 TCACAAAGATCTGCATG 239967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| || | ||| | | | || ||||| || ||||||||||| || |||||| Sbjct 239955 GCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCC 239896 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| |||||||| || || | |||| || | ||| || || ||||| |||||||| || Sbjct 239895 ATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTT 239836 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || ||| | | || | || || | ||||| ||||| | || | Sbjct 239835 GTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGAT 239776 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | ||| |||||||| Sbjct 239775 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575346922480