Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1 122 3e-24 seq51 100 9e-18 seq620 98.7 3e-17 >seq1 Length=45240865 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 44404457 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 44404398 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 44404397 CCGGGCTTCAGC 44404386 Score = 120 bits (132), Expect = 1e-23 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 44409721 TAGGGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 44409662 Query 2825 AACCCCGGGCTTCAGC 2840 || ||||||||||||| Sbjct 44409661 AATCCCGGGCTTCAGC 44409646 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 44414415 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 44414356 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 44414355 CCCGGGCTTCAGC 44414343 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 44390396 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 44390455 Query 2828 CCCGGGCTTCAGC 2840 ||| ||||||||| Sbjct 44390456 CCCAGGCTTCAGC 44390468 >seq51 Length=4753918 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 4523563 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 4523504 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 4523503 CCCGGGTTTCGGC 4523491 >seq620 Length=67295 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 15597 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 15538 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 15537 CCGGGTTTCGGC 15526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848556749610