Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-44 seq8 194 2e-43 seq586 125 1e-22 seq394 98.7 1e-14 seq47 98.7 1e-14 >seq4 Length=19526422 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 19426272 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 19426219 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||||||| ||| Sbjct 19426218 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 19426159 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 19426158 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 19426099 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 19426098 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 19426050 >seq8 Length=16390125 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| ||| |||| ||||| Sbjct 4435650 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC-----GGGCATC-TCCTCCAAGGCCATG 4435597 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| | || ||||| | | ||||||| ||| Sbjct 4435596 GGCATCATGAACTCCTTTGTCAACGACATCTTTGAGCGCATTGCCGGCGAGGCCTCGCGC 4435537 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 4435536 CTGGCGCACTACAACAAACGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 4435477 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 4435476 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 4435428 >seq586 Length=108663 Score = 125 bits (138), Expect = 1e-22 Identities = 112/138 (81%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| ||||| Sbjct 80693 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 80752 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 80753 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 80811 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 80812 CCTGTGCACCGAGATCGT 80829 Score = 98.7 bits (108), Expect = 1e-14 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 262947 CATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAGGTCATCAC 263006 ||||||||||||| | || | |||||||||||||||| |||| | ||||| | ||| Sbjct 97686 CATGCCCACGGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACAC 97745 Query 263007 GAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 |||||||||||||||||| | ||||||||||| || || Sbjct 97746 CAGCAACATCTACACGCGCAGGGTGCTCTCGGGGGAGTT 97784 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| ||||| |||||||| ||||| || |||||| Sbjct 76591 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAG 76650 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | || || ||||| || |||||| Sbjct 76651 TGTGCCCTCATCTCCAAGTCTGCTGGGGGCATTGGCCTTGCCG 76693 >seq394 Length=302097 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 724929 CAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCG 724988 |||||||||||| ||| | ||| ||| || |||| ||||| |||||||||||| Sbjct 100485 CAGGTGCACCCCG--ACC--TCGGC-ATC-TCGTCCAAGGCCATGAGCATCATGAACTCG 100538 Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || || | ||||||| | || || | | ||||||| | |||||||||| || | Sbjct 100539 TTCGTGAGCGACATGCTGGAGCGGCTGGCGGCCGAGGCGGCGCGCCTGGCGCACTACGGG 100598 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 ||| ||| | ||| |||||| | ||| | || | ||| ||| | ||| ||| Sbjct 100599 GGCCGCGCCACCCTGAGCAGCCGCGAGGTGCAGGCGGCGGCGCGGCTGCTGCTGCCCGGG 100658 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| |||||||||| ||||||||||||| Sbjct 100659 GAGCTGGCCCGGCACGCCGTGTCCGAGGGCACCA 100692 >seq47 Length=4964275 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 876947 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 876888 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 876887 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 876835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177230752838916