Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq45 111 2e-19 >seq45 Length=5063729 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || || || ||| | |||||||| || || ||| | | | | ||| | Sbjct 161380 CAGATGATCGATGGAGAAATGTACCCTCCGACGGTGCGGGACACGCAGGCAGAGATGCTG 161439 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| ||| || ||||| | | || ||| | |||| | ||| |||| || || Sbjct 161440 TACCCGCCCCATGTGCCCGAGCACCTGCGCTTCTCCGTGGGCCAGGAGGTGTTCGGCCTG 161499 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || ||||| ||||||||| ||||||||| | ||||||||| | || |||||| Sbjct 161500 GTGCCGGGGCTCATGATGTACGCCACGATCTGGCTGCGCGAGCACAACCGCGTCTGCGAC 161559 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| || || ||||||| || ||| | || || ||||| ||||||| Sbjct 161560 GTGCTCAAGCACCAGCACCCCGAGTGGGATGATGAGCAGCTCTTCCAGA 161608 Score = 111 bits (122), Expect = 2e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || || || ||| | || || ||| Sbjct 163268 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATTGATGCCATGGAGCTGTAC 163327 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 163328 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 163387 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 |||||| || |||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 163388 ATGGGGGCCCCATTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 163447 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | ||| ||||||| | | || |||| Sbjct 163448 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTCGACATCGTCAACACTGCCTCCCTG 163507 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| ||||| ||||| || |||| |||| Sbjct 163508 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACCGCCTTCC 163556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723286386688320