Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 seq47 123 3e-23 >seq1 Length=45240865 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || | ||||||||| || || | ||| | Sbjct 22187626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 22187567 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 22187566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 22187507 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 22187506 CAACCACTCTCTCACC 22187491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 || |||||| | ||| ||||||||| || ||||||||||| || ||||||||||||| | Sbjct 22182798 AAGTCTTTCTCACCAGATTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 22182739 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| ||||| ||||||||||| | | ||| || ||||||| Sbjct 22182738 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGT 22182694 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 22185473 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTA 22185414 Query 39854 AA 39855 || Sbjct 22185413 AA 22185412 >seq47 Length=4964275 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| || | || | Sbjct 874360 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 874419 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| || |||||||| | Sbjct 874420 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 874479 Query 39759 CAACAA 39764 | |||| Sbjct 874480 CCACAA 874485 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 39306 CTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTT 39365 |||| ||||| |||||||| | || |||||||| || || ||||| || ||||| || | Sbjct 873147 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 873205 Query 39366 TGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 ||||||||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 873206 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 873258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686857127285520