Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq108 113 4e-20 seq47 104 2e-17 seq1 89.7 4e-13 >seq108 Length=2131741 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 1514150 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 1514209 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | ||||| || || || |||||||||||||| || || ||||| || || | Sbjct 1514210 CTTGCCAGCTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCA 1514269 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||||||||| |||||||| || || || Sbjct 1514270 GCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 1514306 >seq47 Length=4964275 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 876099 CAAGAAGTGCAAATCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 876040 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| ||||||||||||||||| || || || ||||| || || Sbjct 876039 ATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACATTAAGGA 875993 >seq1 Length=45240865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 22187503 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 22187562 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || |||||||||| ||||| || || ||||| | || || | ||| Sbjct 22187563 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 22187622 Query 44255 GA 44256 || Sbjct 22187623 GA 22187624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426848838090