Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq129 147 7e-30 seq136 136 1e-26 seq138 95.1 4e-14 seq1324 93.3 1e-13 >seq129 Length=2407505 Score = 147 bits (162), Expect = 7e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 ||||||| || | | || ||||| || ||||| ||||| || || || || || |||| Sbjct 240196 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 240137 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || |||||||| || || || ||||||||||| || | ||||| ||||||| Sbjct 240136 AGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 240077 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| || ||||| || || || || ||||| ||||| | ||| || || | Sbjct 240076 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGA 240017 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| || | ||||| || || || || || ||||| |||||||| Sbjct 240016 CTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 239968 >seq136 Length=1597971 Score = 136 bits (150), Expect = 1e-26 Identities = 500/772 (65%), Gaps = 16/772 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGG-TGAAACAGTAACTGATGCTGTTATTAC 349620 || |||||||| ||||| || || ||| | || || || || ||||||| || || Sbjct 425545 AAGATGAAGGAGATTGCCGAGGCTTATCTGGGGTGCAAG-GTGCAGAATGCTGTCATCAC 425603 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || ||||| ||||||| || || || || || |||| ||| | Sbjct 425604 AGTGCCTGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCATCAC 425663 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | ||||| | | || || || || |||||||| || || || || || || || Sbjct 425664 AGGCCTCAATGTGATGCGTATCATCAACGAGCCCACTGCAGCCGCTATCGCCTACGGCCT 425723 Query 349741 TGATAA--AATGA----GTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | || || ||| | || || ||||| | || || || Sbjct 425724 GGACAAGAAAGGAACCCGGGCTGGGGAGAAGAATGTCCTCATCTTTGACCTGGGAGGGGG 425783 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||||||||||| || | || || | || || || |||||||| || || | || || Sbjct 425784 CACTTTTGATGTCTCCATCCTTACCATCGAGGACGGGATTTTTGAGGTAAAGTCCACAGC 425843 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||| || ||| | ||||| || || ||||| || || | || || ||||| | Sbjct 425844 TGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTTGTGGA 425903 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCC 349973 |||||| ||||| ||||| || ||| |||| | || |||| || | || | Sbjct 425904 AGAATTCAAGCG-CAAGCACAAGCGTGACATTGCCGGCAACAAGCGAGCGGTGAGGCGGC 425962 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAACCTCTAT 350031 | | || || ||||| | || ||||| || ||| || || || || || || Sbjct 425963 TGCGCACGGCTTGTGAGAGGGCAAAGCGCACC--CTCAGCTCCTCCACGCAGGCCAGCAT 426020 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 ||| ||||| ||||| ||| |||| || |||| | || || || ||||| || || Sbjct 426021 TGAGATTGACTCTCTGTTTGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCGTTT 426080 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | | || ||||| | | || |||| || ||||| || | | Sbjct 426081 CGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTCTGCG 426140 Query 350152 AGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211 ||||| || | ||| ||||| | || | || | || || || ||||| || Sbjct 426141 CGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGGGGCTCTACCCG 426200 Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT-TCTAGAT 350270 || || || | || || | || || || || || |||||||| | | | ||| Sbjct 426201 GATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAACGGCAAAGAGCTTAACAAGAG 426260 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 | || || || ||||| ||||| || || ||||||||||| || ||| |||| Sbjct 426261 C-ATCAACCCCGATGAGGCTGTGGCTTACGGTGCTGCTGTACAAGCAGCTAT 426311 >seq138 Length=2120562 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 827544 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 827600 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 827601 GTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAATGGAGTC 827660 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 827661 TTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 827713 >seq1324 Length=8404 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| ||||||||||| || || | ||||| || || ||||||| Sbjct 5808 ATGCTGTGGTCACTGTCCCAGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAAGATG 5867 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | |||||||||| | || || || ||||| || || || ||||| || || || | Sbjct 5868 CCGGAACCATTGCGGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACGGCAGCCGCCA 5927 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| || ||||| || || Sbjct 5928 TTGCCTACGGGCTGGACAA 5946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515137565362454