Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq586 89.7 6e-13 >seq586 Length=108663 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 20067 AGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGG 20126 |||||| |||| || || ||| |||||||| || | |||||||| |||||||||| Sbjct 95626 AGGCGGAGCGC---TCCAACCGGCGGCACCGGCCCATTGGCATCGGCGTGCAGGGCCTGG 95682 Query 20127 CCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC-CCAAGGCGC-GCGAGCTCAA 20184 | |||| ||||| || | | || | ||||| || | || |||| | ||| ||||| Sbjct 95683 CTGACGCCTTCATCCTGATGCGGTTCCCCTTCGA-GAGCGCCGAGGCTCAGCG-CCTCAA 95740 Query 20185 CAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAA 20244 | || |||||||||| || | ||| ||| |||||| || || || || |||| Sbjct 95741 CCAGCACATCTTCGAGACCATCTACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCAG 95800 Query 20245 AGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCC 20280 ||| | ||||| ||||| || | | |||| ||||| Sbjct 95801 GGAGCAGGGCCCCTACGACACCTACCAGGGCTCGCC 95836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 80851 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 80792 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||| |||||||||| |||||| || || || Sbjct 80791 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 80732 Query 79200 GGTCTC 79205 ||||| Sbjct 80731 AGTCTC 80726 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || |||||||| | ||||||||||| | || |||| ||| || || ||||||||||| Sbjct 76685 CCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCT 76626 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 76625 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 76588 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/205 (71%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACT 78778 ||||||| |||| | | || ||||| | |||| |||| |||| || || || | || Sbjct 95838 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 95779 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTG 78837 | ||||||| ||| ||| | | |||||||||| || |||||| ||| | |||| | Sbjct 95778 C---CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-CGCTGAGCCTCG 95723 Query 78838 GT-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGAT 78896 | ||| ||||| | | | | || |||||| | || ||||||||||| |||||||| Sbjct 95722 GCGCTC-TCGAAGGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGAT 95664 Query 78897 AGCGATCGGTCGGTGGCGCATGTTG 78921 | || || ||||| ||| |||| Sbjct 95663 GCCAATGGGCCGGTGCCGCCGGTTG 95639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548483537221920