Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq231 102 9e-17
seq586 86.0 7e-12
seq1 86.0 7e-12
>seq231
Length=1316434
Score = 102 bits (112), Expect = 9e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | |||||| | || ||||| || ||||| || ||||||||
Sbjct 1306227 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTGCCCCCGTGCAGCCTTGTGCCAAACTGA 1306168
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144
||| ||||| ||| | ||||||||||||| |||||| || ||||||||||| ||
Sbjct 1306167 CCAATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 1306112
>seq586
Length=108663
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||||||||| || |||||||| ||| ||||| ||||||||||| || || |||
Sbjct 76588 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAG 76647
Query 53390 GAGTGTGCCCACATCTCCAAGT 53411
||||||||| |||||||||||
Sbjct 76648 CAGTGTGCCCTCATCTCCAAGT 76669
>seq1
Length=45240865
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | | |||||||| || || | |||||||
Sbjct 22187624 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22187565
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| |||||||||||||| || ||||||||
Sbjct 22187564 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 22187505
Query 74892 AC 74893
||
Sbjct 22187504 AC 22187503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547174835676400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |