Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq129 196 5e-45 seq586 100 3e-16 seq231 84.2 2e-11 >seq129 Length=2407505 Score = 196 bits (216), Expect = 5e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | | Sbjct 239511 AATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 239570 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | ||||| || || |||||||||||||| ||||| |||||||| Sbjct 239571 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 239630 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| ||||| |||| |||||||| | ||||| || Sbjct 239631 GCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAA 239690 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || |||| || |||||||| Sbjct 239691 CATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGCGCGGTGG 239738 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || ||||| || ||| | || Sbjct 239968 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 240027 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 240028 GACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 240087 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 240088 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 240147 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || || ||||| Sbjct 240148 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 240194 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || ||||| || ||| | || Sbjct 239740 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 239799 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || || || ||||||||||| || || ||||| |||||| Sbjct 239800 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 239859 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| |||||||||| |||||||| | ||||| || Sbjct 239860 CAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAAC 239919 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||||| || |||| || | ||||| Sbjct 239920 ATCCAGAAAGAATCTACCCTGCATCTCGTGCTGCGCCTCAGGGGTGG 239966 >seq586 Length=108663 Score = 100 bits (110), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 |||| || ||| | | || ||||| ||||||| | | ||||||||||||| | || Sbjct 95838 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 95779 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 ||| ||||| ||| || ||| ||| |||| | || ||| | | | |||| | Sbjct 95778 CCA---GGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGAGCCTCGG 95722 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 | ||||| | || | ||||| ||||| |||||||||||||||| ||||||||| Sbjct 95721 CGCTCTCGAAGGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGC 95662 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 | || || ||||| ||| ||| || ||||| |||| ||| Sbjct 95661 CAATGGGCCGGTGCCGCCGGTTGGAGCGCTCCGCCTGCGG 95622 >seq231 Length=1316434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| | ||| | |||||||||||||| || || ||||| ||||| ||| |||| Sbjct 1306103 ACCATCATTAACTTGGCTCAGAACTTTGTGGGCAGCAACAACCTCAACTTGCTCCAGCCC 1306162 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||| ||||| || |||| ||| | || |||||| Sbjct 1306163 ATTGGTCAGTTTGGCACAAGGCTGCACGGGGGCAAAGACTCTGCCAGCCCTCGATACATC 1306222 Query 32245 TTCACC 32250 |||||| Sbjct 1306223 TTCACC 1306228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267498400160