Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq99 271 1e-67 >seq99 Length=3178465 Score = 271 bits (300), Expect = 1e-67 Identities = 667/1001 (67%), Gaps = 18/1001 (2%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||| || |||||| |||||| | | | || | | Sbjct 229826 CGCCCGGCGAGTACCTGAACATTGCGAGGGACTGCAGAGCCTTCAAGGAGACCCGGCGCT 229885 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | || || |||| ||| |||| ||||| |||||||||||||| || | | Sbjct 229886 ACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCA 229945 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 |||||||||| ||||| ||||| ||||| |||||| || || |||||||||| |||||| Sbjct 229946 TCCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAACG 230005 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 | ||||||||||| || ||| ||| ||| | || ||| || ||| ||||| Sbjct 230006 TTTACTGCGTCCATGTAGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGAGGGCCA 230065 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | || |||||||| || || | ||||| ||| ||| | |||||| || | || Sbjct 230066 TTGCTGCCTGCTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCT 230125 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || |||||||||||||||| ||||||| |||||| ||| || Sbjct 230126 CCTGGTCCCGGGTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCTGTGC 230185 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 ||| | ||||| ||||| ||||| | |||||||| ||||||||||| |||| Sbjct 230186 CATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGA 230245 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCATGCCC 14078 | || ||||||||| || ||| ||| | |||||| ||||| |||| ||| | | Sbjct 230246 TAGTCCGGGCGCTGCAGCTGCTGCAGGGCCACAACGCCATGGAGTCCGAGAGGC--CCTC 230303 Query 14079 AACC-ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGT 14137 || |||| ||| ||| | | |||| |||| | || | | | | Sbjct 230304 GGCCGCCAAGAAGCAGCGCTGGGAGTATCACCACGAGGTG----GGGGAGACCATCT-CT 230358 Query 14138 CAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGC 14197 | ||| | ||| || || || || | ||| |||||| || |||| | ||| Sbjct 230359 C-GCACTTCCCAGAAGAAACTGCCCCCACCCCACAGCTACCCCATGTTCACGGGCAGCGC 230417 Query 14198 TTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC- 14256 ||| || ||||| ||||| |||||| | | || || || || || || | Sbjct 230418 CTACACCGCCGTCACACGGGACTTCGTGCGGTACATCTTCGAGAAC---CCCACCGCACG 230474 Query 14257 --TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGT 14314 | || | | |||| |||||||| |||||||| ||||||||| ||||||||||| | Sbjct 230475 AAAGTTCCTCGAGTGGTCCGAGGACAGCTACAGCCCTGACGAGCACGTGTGGGCCACCCT 230534 Query 14315 GCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGA 14374 | | | ||| || ||| ||| | || ||| | || |||| | | |||||| Sbjct 230535 GAACCGCATGCCGGGCGTGCCGGGGAGTATGCCCCTCAGCGATAAGTTCCAGCTCTCGGA 230594 Query 14375 CATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGG 14434 |||| ||| | | | ||||||||| | ||| |||||||| || | || || Sbjct 230595 CATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATGAGCAAGGG 230654 Query 14435 GGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGG 14494 || | ||||| || ||| |||| |||| | | |||||||||||| |||| || Sbjct 230655 CGCGCCCTACCCTCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGGG 230714 Query 14495 CGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGA 14553 ||||||| ||| || | ||| | | || || | ||||||||||||||| |||| Sbjct 230715 CGACGTGCCCTGGATGCTGCAGCAACAC-CATCTCCTGGCCAACAAGTTCGACCCCGAGG 230773 Query 14554 CGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 |||||| ||| | | ||||| || ||| || ||||| Sbjct 230774 TGGACGATGCGGCCATCCAGTGTCTCGAGGAGTACCTGCGC 230814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658689646343680