Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq108 131 1e-25 seq317 96.9 3e-15 >seq108 Length=2131741 Score = 131 bits (144), Expect = 1e-25 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 1510688 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 1510629 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| |||| ||| ||| ||| |||| || || | ||| || ||||| | Sbjct 1510628 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTGGCAT 1510570 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || || || ||||||||||||||| ||||| || || Sbjct 1510569 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 1510521 Score = 120 bits (132), Expect = 2e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 1514312 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 1514253 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||||||| |||||||| || || | || || | Sbjct 1514252 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGCTGGCAAGACAATTCACCATTTAGA 1514193 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| | |||||| || Sbjct 1514192 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 1514149 >seq317 Length=500491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| || | || ||||||||| | | ||| | ||||| || ||| Sbjct 154504 TTGAGCTCCCTGCTGAGCACAATATTAATCCTGTCTTTTAAAGGACGGTTCTTCTCAGGG 154563 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 154564 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 154611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406280599417656