Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq108 127 2e-24 >seq108 Length=2131741 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| || | |||||||| | || || ||||| |||| ||||| ||||| || ||| Sbjct 1514140 GATATCTCACTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAAT 1514199 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || |||| |||||||||||||| | || ||||||||||| |||| ||||| || Sbjct 1514200 GGTGAATTGTCTTGCCAGCTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTT 1514259 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || ||||| || || | ||||||||||||||||| || |||||| Sbjct 1514260 AATATTGCCAGCTATTCACTGCTCACGTACATGATTGCCCATGTC 1514304 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 1514304 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 1514245 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||||||||| |||| || ||||| || ||||| Sbjct 1514244 TCCCATGTCTCCAGACCTCTGATAGAGCTGGCAAGACAATTCACCATTTAGAACATAGAA 1514185 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| |||| ||||| || || | |||||||| | || ||| Sbjct 1514184 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGTGAGATATC 1514140 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| || | ||||| || || || | Sbjct 1510534 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCCAATGGGTCCCGTGAGTTCC 1510593 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 1510594 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 1510653 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 1510654 AGTGGAGGCATTTTGGAGCAGAATA 1510678 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 1510678 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 1510619 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || ||||| | || ||||| |||||| Sbjct 1510618 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGGGACCCATTGGCATCCCAAATCTTC 1510559 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 1510558 ACACCTTTTGCAGAGAGCTCTTTGG 1510534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228679460960