Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq7 122 7e-23 seq108 96.9 3e-15 >seq7 Length=17182522 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||||||||| |||||||| | ||||| || ||||| ||| Sbjct 4893785 GTGGTGGAGGAGCTCTTCCGAGATGGGGTTAACTGGGGCAGGATTGTGGCCTTCTTCGAG 4893726 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||| ||||| |||||||| | | || | |||||| |||| | Sbjct 4893725 TTTGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCACCTCGTGGACAGC 4893666 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 4893665 ATCGCCGCCTGGATGACCGA 4893646 >seq108 Length=2131741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||||||||| Sbjct 1514312 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 1514253 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | |||||||| | || || ||| | Sbjct 1514252 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGCTGGCAAGACAATTCACCATTTAGA 1514193 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||| | |||| Sbjct 1514192 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 1514152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414446400458152