Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq129 134 3e-26 >seq129 Length=2407505 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || ||||| || |||| ||||| || | || || Sbjct 239732 CGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 239673 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| ||||||||||| |||||||| || | || ||||| || ||||| || Sbjct 239672 CGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCC 239613 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||| |||||||| || || || || | Sbjct 239612 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGG 239553 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| |||| || || | ||| | |||||||| Sbjct 239552 GTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 239509 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||||||||| ||||| || || || |||| ||||| || | | || Sbjct 240188 CGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 240129 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| ||||| || | || ||||| || || || ||| Sbjct 240128 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 240069 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||| || ||||| || || || || | Sbjct 240068 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACTTCAAGG 240009 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 240008 GTGATGGTCTTGCCAGTCA 239990 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || || |||||||| |||| ||||| || | || || | ||||| Sbjct 239952 CAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 239893 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| |||||||| || | || ||||| || || || ||||||||||| Sbjct 239892 CTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 239833 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || || || |||||||| || || || || | ||||| || Sbjct 239832 CTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGT 239773 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 239772 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192439249136492