Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq108 129 5e-25 seq317 96.9 3e-15 >seq108 Length=2131741 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| ||| Sbjct 1514312 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 1514253 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||||||| ||||||||||| || | || || | Sbjct 1514252 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGCTGGCAAGACAATTCACCATTTAGA 1514193 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || ||||| || | ||||||||| ||||| | ||||| || Sbjct 1514192 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 1514149 Score = 109 bits (120), Expect = 4e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 ||||||||||||||||| || ||||| ||||||| || ||||| || ||| |||| ||| Sbjct 1510666 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 1510608 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | ||| || ||||| ||||| ||||| || || || | Sbjct 1510607 ACCCTGCTTATCCAGGAACTCACGGGACCCATTGGCATCCCAAATCTTCACACCTTTTGC 1510548 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 1510547 AGAGAGCTCTTTGGCATTTGTAGAACC 1510521 >seq317 Length=500491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | ||||||| | | ||| | ||||| || ||| Sbjct 154504 TTGAGCTCCCTGCTGAGCACAATATTAATCCTGTCTTTTAAAGGACGGTTCTTCTCAGGG 154563 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 154564 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 154611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406133410213948