Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq47 107 3e-18 seq1 102 1e-16 >seq47 Length=4964275 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| ||| | || || Sbjct 874362 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 874421 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 874422 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGCC 874481 Query 46774 ACAA 46777 |||| Sbjct 874482 ACAA 874485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 46319 CTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTT 46378 |||| ||||| |||||||| | || ||||||||||| || ||||| || ||||| || | Sbjct 873147 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 873205 Query 46379 TGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| || || |||||||| || ||||| ||||| Sbjct 873206 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 873245 >seq1 Length=45240865 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 22187624 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22187565 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 22187564 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 22187505 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 22187504 ACCACTCTCTCACC 22187491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712880769509760