Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq129 109 4e-19 >seq129 Length=2407505 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || ||||| || || |||||| ||||||||||| || | | Sbjct 240194 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 240135 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||||| | |||||| || | ||| Sbjct 240134 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 240075 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | || | || ||||| || || || Sbjct 240074 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACT 240015 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 240014 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 239967 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| || || || || ||||| ||||||||||| || Sbjct 239742 CATCCCACCGCGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 239683 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || ||||||||||| || ||||||| | |||||| |||| Sbjct 239682 AGACAGGGTACGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGG 239623 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | || | |||||||| || || Sbjct 239622 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 239563 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 239562 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239512 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||| || || || || || || ||||||||||| || Sbjct 239970 CATGCCACCCCTGAGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTC 239911 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || ||||||||||| || ||||||| | |||||| || | Sbjct 239910 AGACAGGGTACGGCCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGG 239851 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 239850 AGGGATGCCTTCCTTGTCCTGGATCTT-GGCTTTGACGTTCTCAATGGTGTCACTGGGCT 239792 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||| || || |||||||| |||||||| ||||| Sbjct 239791 CGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359963996729106