Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq45 203 5e-47 seq138 107 3e-18 >seq45 Length=5063729 Score = 203 bits (224), Expect = 5e-47 Identities = 223/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 163556 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCAG 163497 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 163496 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 163437 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| || ||||||| ||| | ||| Sbjct 163436 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 163377 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 163376 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 163317 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||| ||||| || || || || || || ||||| |||||||||| Sbjct 163316 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 163260 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | ||||||||| || ||||| ||| ||| || || || | || || || Sbjct 161621 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCATCATCCCACTCGGGGTGCTGGTGCTTGAGC 161562 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || ||||| || | |||||| || | |||||||| |||||||||||||||||||| || Sbjct 161561 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGC 161502 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || |||| || || || | | |||| || |||||||| | ||| || Sbjct 161501 ACCAGGCCGAACACCTCCTGGCCCACGGAGAAGCGCAGGTGCTCGGGCACATGGGGCGGG 161442 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| |||| || || |||||||| || || |||||| Sbjct 161441 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATTTCTCCATCGATCATC 161382 Query 9484 TG 9485 || Sbjct 161381 TG 161380 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 159788 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 159729 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| ||||||||||| || ||| | |||||| ||||| | Sbjct 159728 TAGTAGGAAAGATTGGAATAAGCTTCCCAGGTTTTGTAATTGTAGTCACTATTGTAAGTT 159669 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 159668 GGTGGGCTGTCAATCAAATGTGATCTTGCTGA 159637 >seq138 Length=2120562 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || |||| || || || ||||| ||||||||| | |||| Sbjct 1629722 TCTTCACGATCTCAAAGCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1629781 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| || ||||| || | ||| | |||| Sbjct 1629782 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1629841 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| ||||||| |||| || |||| || || || | ||| | ||||| Sbjct 1629842 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1629901 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 1629902 GAGCATCAATGTCTCCATACAG 1629923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716822872942720