Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq129 158 3e-33 >seq129 Length=2407505 Score = 158 bits (174), Expect = 3e-33 Identities = 168/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| || || || || ||| Sbjct 239743 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGA--GCCCAGTG 239800 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 239801 ACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGC 239860 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || |||||||| ||||| | || || | || || ||| Sbjct 239861 AGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAACA 239920 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || |||||||| || || | ||||| Sbjct 239921 TCCAGAAAGAATCTACCCTGCATCTCGTGCTGCGCCTCAG 239960 Score = 132 bits (146), Expect = 1e-25 Identities = 161/217 (74%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||| ||||| || Sbjct 239509 AAAATGC---AGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGA- 239564 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || ||||| ||||| |||||||| || || || || | Sbjct 239565 -GCCCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCC 239623 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || |||||||| || || |||||||||||||| | || || | | Sbjct 239624 CAGACCAGCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAAGATGGCCGTACCCTGTCTG 239683 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || |||||||| || Sbjct 239684 ACTACAACATCCAGAAGGAATCTACCCTGCATCTCGT 239720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203638385553492