Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq129 131 2e-25 >seq129 Length=2407505 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| |||||||| || |||||||| ||||| ||||| || Sbjct 239738 CCACCGCGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 239679 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 239678 AGGGTACGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 239619 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||| | | ||||| || | ||| ||| Sbjct 239618 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACC 239559 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || ||||| ||||| ||||| |||||||| || Sbjct 239558 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 239509 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 239957 AGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 239898 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| || ||||| ||||| | ||| ||||| | || | || ||| Sbjct 239897 CCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 239838 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | ||||| || | ||| || || | || Sbjct 239837 TTGTCC-TGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGT 239779 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 239778 GATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || ||||||||| ||||| ||||| ||| Sbjct 240194 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 240135 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 240134 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 240075 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | |||||| || | ||| || Sbjct 240074 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACT 240015 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || ||||| ||||| || || ||||||||| Sbjct 240014 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 239967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462269223181600