Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq869 141 1e-28
seq2229 100 3e-16
>seq869
Length=1738336
Score = 141 bits (156), Expect = 1e-28
Identities = 161/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202
||||||||||||||||||||| | ||| |||||||| || || |||||| ||| |||
Sbjct 937859 GAACTTCTCGAAGTTCCAGGCGATGTCATTGCGGCAGACCGGGGACCAGATGATGTACTG 937918
Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262
|||| | ||| |||| | ||||||| || ||||| |||||| |||||
Sbjct 937919 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 937978
Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320
|| |||||| || ||||| |||| ||||| ||||||||||||||||| | || ||
Sbjct 937979 GGTGAAGAGGGGGTGTGCGTCCTT--TCCGTTCACCTCGCACTTCTCGAACATTATGAAA 938036
Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354
|| |||| ||| || || |||||||| |||||||
Sbjct 938037 TTGGGCTTGAACCCCTTGCCAGGACGAACGTGCT 938070
>seq2229
Length=482378
Score = 100 bits (110), Expect = 3e-16
Identities = 116/154 (75%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447
|| |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | ||
Sbjct 99979 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGG--GGTA 100036
Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507
||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || |
Sbjct 100037 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 100095
Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| |||||||| || || | || |||||||| ||
Sbjct 100096 CCACGTTCTCAATCAGGACCACGCGGCCCCGGAA 100129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608774479987320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |