Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 150 2e-31
seq2912 129 6e-25
seq2369 84.2 2e-11
>seq2502
Length=4400873
Score = 150 bits (166), Expect = 2e-31
Identities = 166/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||||||||| || ||||| || || || |||||||| ||||||||| | || || ||
Sbjct 927979 GAAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGC 928038
Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
||| ||||| | | | | |||||| || || | ||||| || |||||||| | |
Sbjct 928039 CCAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTG 928098
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
||||||| | ||||| | ||| ||||| |||||||| || | || |||||| |||||
Sbjct 928099 ACCAGCAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACT 928158
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| || |||| ||||| | ||| |||||
Sbjct 928159 ACAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGC 928199
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || |||||||| || ||||| | || ||||| |||
Sbjct 928580 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACAATCACTCTGGAAGTCGAGCCCAGT 928639
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||| | || || | || || || |||||||| | ||||||
Sbjct 928640 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 928699
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || || ||||||||||| || | || ||||| |||||||||
Sbjct 928700 CAGAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 928759
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || ||||| || || |||||| || |||| ||
Sbjct 928760 ATCCAGAAGGAGTCAACTCTGCACCTTGTCTTGCGCCTGCGGGGTGG 928806
>seq2912
Length=3111161
Score = 129 bits (142), Expect = 6e-25
Identities = 97/114 (85%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||||| |||||||||||||| ||||| || |||||||| || |||| |||
Sbjct 2001001 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 2000942
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| |||||||| ||||||||||| || |||||||| | |||||||||
Sbjct 2000941 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 2000888
>seq2369
Length=237747
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || || || || ||| ||||||||||||| || || || |||||||
Sbjct 219986 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 220045
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| |
Sbjct 220046 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 220105
Query 117162 ACGAGG 117167
| ||||
Sbjct 220106 ATGAGG 220111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515200310776080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |