Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq1223 104 4e-17
>seq1223
Length=7284131
Score = 104 bits (114), Expect = 4e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 1992902 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 1992961
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||||
Sbjct 1992962 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 1993021
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 1993022 TAACTTCTACTATCGGACATATAAG 1993046
Score = 98.7 bits (108), Expect = 2e-15
Identities = 103/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| ||||| |||||||| | ||| | ||||| ||||| |||||||||| ||||| ||
Sbjct 1992277 GCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTACGGA 1992336
Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || ||||| || |||| || |||||| || || ||||||||||| ||| | || ||
Sbjct 1992337 TTAGCAGCTTGCGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 1992395
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 1992396 ATTGCAATTGGTA 1992408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923162953297320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |