Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2502 127 1e-24 >seq2502 Length=4400873 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||| ||| | ||| ||||||||| |||||||||||||| || |||| | || Sbjct 928196 CAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATC 928137 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||||||||||| ||||||||| || | || |||||||| Sbjct 928136 CTCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 928077 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | ||| | | || || || | |||||||| Sbjct 928076 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGT 928017 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||||||||| Sbjct 928016 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 927984 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | ||| || ||||| ||||||||||| ||| Sbjct 928806 CCACCCCGCAGGCGCAAGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 928747 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| ||| || || || || || |||| ||||||||| || Sbjct 928746 AGGGTACGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 928687 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||| || ||||| | || | || | || | | ||||| Sbjct 928686 ATGCCTTCCTTATCCTGGATC-TTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGAC 928628 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || ||||| || || || || ||||||||||||||| Sbjct 928627 TTCCAGAGTGATTGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATC 928579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060451488480