Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2369 105 6e-18 seq2912 89.7 5e-13 >seq2369 Length=237747 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 227523 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 227464 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 227463 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 227404 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 227403 TGAAATCAAAAGGATTTTCTG 227383 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || | || ||||| || || | || || Sbjct 220109 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 220050 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 220049 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 219990 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 219989 ACCACTCTCTCACC 219976 >seq2912 Length=3111161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||||| ||||| || || || ||||||| ||||| ||| || Sbjct 1998343 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1998402 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 1998403 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 1998462 Query 16379 AC 16380 || Sbjct 1998463 AC 1998464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 |||||| ||| ||| || || || || || | ||| |||||||||||||| ||||| Sbjct 2000042 TCTTTGGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 2000101 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || ||||| || || | |||||| | ||||||||||| Sbjct 2000102 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 2000154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462495043153800