Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 89.7 4e-13
>seq2502
Length=4400873
Score = 89.7 bits (98), Expect = 4e-13
Identities = 162/233 (70%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153
|||| || ||||| || | | || | ||| || ||||| || || || ||||||||||
Sbjct 928810 GTTA-CCACCCCGCAGGCGCAAGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGT 928752
Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213
| | || || | ||| |||| ||||| || ||| |||| || || || || ||
Sbjct 928751 CAGACAGGGTACGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAG 928692
Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC 18272
|| | |||||||||||| || | | || ||||| | | ||| ||||||| ||||
Sbjct 928691 GAGGGATGCCTTCCTTATCCTGGATCT-TGGCTTTGACATTTTCAATGGTGTCACTGGGC 928633
Query 18273 TCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325
||| ||| | ||||| | ||||| |||| || || ||||| || |||||
Sbjct 928632 TCGACTTCCAGAGTGATTGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 928580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || |||||||| || ||||||||||||| | || | |||
Sbjct 928195 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 928136
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| || | || || || || || || || | ||||||||| ||
Sbjct 928135 TCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 928076
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||| | |||||| |||| ||||||| |
Sbjct 928075 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTC 928016
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAttttt 18329
||||| |||| || || || || || |||||||||
Sbjct 928015 TTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTTT 927980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379330439993085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |