Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2350 120 3e-22
seq2502 96.9 3e-15
>seq2350
Length=253660
Score = 120 bits (132), Expect = 3e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| |||||||| || || || || || || ||||| ||||| || |
Sbjct 176748 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 176689
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||||| || ||||||||| || | ||||| || ||||||||||||||||| || |
Sbjct 176688 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 176629
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||| ||||| ||| ||||||||||| ||
Sbjct 176628 TGCCAGTCTCAGTCTGGGACTCGATGATGGC 176598
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411
|||| || ||||| || ||||| || || ||||||| || | ||| ||| ||| ||||
Sbjct 175540 TCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTGCTCTTCTT 175481
Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471
| || |||||||| ||||| |||| || || || | |||| ||||||||||| ||||
Sbjct 175480 TCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 175421
Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495
| | |||||| || || |||||||
Sbjct 175420 AGATGGCAAAAGCCCCAGGTCTCT 175397
>seq2502
Length=4400873
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 927980 AAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCC 928039
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | || | ||||| | || |||||||||||| | || || ||
Sbjct 928040 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 928099
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
||||||| | || || ||||||||||| ||| |||| || || | ||| ||
Sbjct 928100 CCAGCAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTA 928159
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || |||||||| ||||| || |||| ||
Sbjct 928160 CAACATCCAGAAAGAATCCACTCTGCACTTGGTGCT 928195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445750057089360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |