Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq536 120 4e-22
seq2912 114 2e-20
seq2369 114 2e-20
seq2350 86.0 8e-12
>seq536
Length=2095904
Score = 120 bits (132), Expect = 4e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||| |||||||||||||| | |||||||||||||| |||||
Sbjct 1962151 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAAGTATATGCAGTCAATCCAAGA 1962210
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| || |||||||| || || || ||||||| ||||| |||||||||||||| ||
Sbjct 1962211 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGACGGAGACATCATAGAAAGTCAC 1962269
Score = 116 bits (128), Expect = 5e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || | |||| || | | ||| || ||||||||||| ||||| |||
Sbjct 1960794 TATTTTTTATTAAATGCCTCCAGAAAACGCAGCAGGTGTAAGAACAGATTTATGATGTCC 1960853
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| || || | | || |||||||| || | || || || || |
Sbjct 1960854 AAGTAGAGATTGATTGAAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAA 1960913
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
|| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| |
Sbjct 1960914 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 1960973
Query 9408 TCCACTGTTTCACT 9421
|| | || |||||
Sbjct 1960974 TCTATCGTCTCACT 1960987
>seq2912
Length=3111161
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 1998341 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1998400
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| || || |||||||
Sbjct 1998401 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 1998460
Query 36300 C 36300
|
Sbjct 1998461 C 1998461
>seq2369
Length=237747
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 219991 CAACCACTCTCTCACC 219976
>seq2350
Length=253660
Score = 86.0 bits (94), Expect = 8e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118
||||| ||||| ||||||||||| ||||| || || | || | ||||||| || ||
Sbjct 175548 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTG 175489
Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
|| || || ||||| ||||| || | || |||||| | | || || | ||||||||
Sbjct 175488 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 175429
Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205
|||| ||| ||||| | | | |||||
Sbjct 175428 CTCCAGGTAGATGGCAAAAGCCCCAGG 175402
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| || || || ||||| || || |||||| || | || || || || ||||| |
Sbjct 184411 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCAGCAATGTGGATGT 184352
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| || || || || ||||||||||| || ||||| |||||||| || | ||| || |
Sbjct 184351 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGATGGTTT 184292
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | || ||||| | ||| || || | |||| | || || ||||
Sbjct 184291 TCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAA 184241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658148669739720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |