Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1659 185 1e-41
seq2613 125 1e-23
>seq1659
Length=6985037
Score = 185 bits (204), Expect = 1e-41
Identities = 219/297 (74%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| || ||||||||| | ||||| || ||| | | ||
Sbjct 4733503 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGACGAGCTTCTGCAGGGAGGCTG 4733444
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||||||| | || ||||| | || |||||||||||||| |||||||| | ||||
Sbjct 4733443 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 4733384
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| |||| || || || ||||| || || ||||||| ||| | |||
Sbjct 4733383 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGCGCCCCCATCTCCACCATGG 4733324
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || |||||||| || |||||||| ||||||| | || | ||||| |||||
Sbjct 4733323 TCTCGCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGCCCTGGGTACAGCTCCA 4733264
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| |||||||| ||||| || || || || || || || |||||||||||||
Sbjct 4733263 TGGCGTCGATGTCCCCGTACAGCTCCTCCAGCTCCGCCGCCATCTCCTTTTCTCCTG 4733207
Score = 96.9 bits (106), Expect = 5e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||| || |||||||| || || || ||||| ||| || || || | || || ||
Sbjct 4731570 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGT 4731511
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| ||||| || | |||||| || | |||||||| || ||||||||||| || || |||
Sbjct 4731510 ATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 4731451
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
||||| ||||| |||| || || || | | ||| | |||||||| | ||| ||
Sbjct 4731450 ACCAGCCCAAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGTGGG 4731391
Query 9802 TAGATCAT 9809
|| | |||
Sbjct 4731390 TACAGCAT 4731383
>seq2613
Length=3979170
Score = 125 bits (138), Expect = 1e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || |||| || || || |||||||||||||| ||||||
Sbjct 1607787 TCTTAACAATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCCGGGG 1607846
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| || | | || || || |||||||| ||||| || | ||| | ||||
Sbjct 1607847 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1607906
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || ||| ||||||| |||| || || | ||| || || | ||| |||||||
Sbjct 1607907 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCTGGGTAAAACTCCA 1607966
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| ||||||||||| || ||
Sbjct 1607967 GAGCATCGATGTCTCCATACAG 1607988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708498823709520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |