Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2369 129 7e-25
seq2912 120 4e-22
seq2350 89.7 6e-13
>seq2369
Length=237747
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992
Query 33446 CAATAAGTCTCTCTCC 33461
||| | |||||| ||
Sbjct 219991 CAACCACTCTCTCACC 219976
>seq2912
Length=3111161
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || |
Sbjct 1998341 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1998400
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || || || |||||||||||||||||||| || || |||||||
Sbjct 1998401 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 1998460
Query 33446 C 33446
|
Sbjct 1998461 C 1998461
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | ||||||||||| || || || || || || || || || |||
Sbjct 1997108 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 1997167
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||| ||||| |||||
Sbjct 1997168 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1997202
>seq2350
Length=253660
Score = 89.7 bits (98), Expect = 6e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
||||| ||||| ||||||||||| ||||| || || | || || ||||||| || ||
Sbjct 175548 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTG 175489
Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
|| || || ||||| ||||| || | || |||||| | | || || | ||||||||
Sbjct 175488 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 175429
Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361
|||| ||| ||||| | | | |||||
Sbjct 175428 CTCCAGGTAGATGGCAAAAGCCCCAGG 175402
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|||| || | ||| || || |||||||| || || || ||||| || | |||||| || |
Sbjct 168526 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 168467
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
|||| || || || |||| || || ||||| || | || || |||||||||||||
Sbjct 168466 TGGCGTAGTCGGGGTGTTTGGTGGTCAGCGTGGCCGCAGTCTCTGCGGCCAGAGTGTCCA 168407
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
|| ||||| || || || | || | || || || ||||||||
Sbjct 168406 GCTCCACCGTGGTCACCCCGCTGTACAGCCCCTGGATCACCTTCAT 168361
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || || ||||| || || |||||| || | || || || || ||||| |
Sbjct 184411 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCAGCAATGTGGATGT 184352
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| || || || || ||||||||||| || ||||| |||||||| || | ||| || |
Sbjct 184351 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGATGGTTT 184292
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| || | || ||||| | ||| || || | |||| | || || ||||
Sbjct 184291 TCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAA 184241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622924361198280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |