Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 201 2e-46
seq2266 89.7 9e-13
seq2912 84.2 4e-11
>seq2502
Length=4400873
Score = 201 bits (222), Expect = 2e-46
Identities = 178/220 (81%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| |||||||| || ||||| ||||| |||||||| || |||||||| || |
Sbjct 928201 AGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGG 928142
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||| || | |||||| || ||||| ||||| || || ||||| || || |||||||||
Sbjct 928141 CCATCCTCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 928082
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422
|||||||| ||||| |||||||| ||| |||||||| |||| || || || | |||
Sbjct 928081 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGGGT 928023
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||| || ||||| |||||||||||||| |||||||||
Sbjct 928022 GATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATT 927983
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291
|| || || || |||||||| || | ||| || || ||||| || |||||||| || ||
Sbjct 928809 TTACCACCCCGCAGGCGCAAGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 928750
Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351
|| || || | ||||| || | ||| ||||| || || || || || || ||||| ||
Sbjct 928749 GACAGGGTACGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 928690
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
|| ||||||||||| || || ||||| || ||||| || |||||||| | ||
Sbjct 928689 GGGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCG 928630
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| ||||| || || ||||| ||||||||||| || ||||||||
Sbjct 928629 ACTTCCAGAGTGATTGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 928580
>seq2266
Length=420336
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
||||||||||| || || || || || ||| |||||||||||| | || || ||
Sbjct 142773 CCTTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 142714
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 142713 AGGGTGATGGTTTTGCCCGTGAGGGTTTTCACGAAGATCTGCAT 142670
>seq2912
Length=3111161
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799
||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| ||
Sbjct 2000889 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 2000948
Query 10800 TACCGGATGGGGAA 10813
||| ||||||||||
Sbjct 2000949 TACTGGATGGGGAA 2000962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921588611018760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |