Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2350 143 5e-29 seq2369 87.8 3e-12 seq2912 84.2 4e-11 >seq2350 Length=253660 Score = 143 bits (158), Expect = 5e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 176748 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 176689 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 176688 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 176629 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 176628 TGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 176569 Query 244884 TGCGAGCCTTGCCCT-CTGCCTCGTAGC 244910 |||| | ||||| ||| |||||||| Sbjct 176568 TGCGCACGCGGCCCTGCTG-CTCGTAGC 176542 Score = 143 bits (158), Expect = 5e-29 Identities = 178/237 (75%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || ||| |||||||| || ||||||||||| |||||| || | | | |||| ||| Sbjct 180212 CACCCCTTTGCTGACCGGAGAACCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 180154 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| |||||||||||||||| ||||| || ||| | | Sbjct 180153 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGA-GC 180095 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 || |||||| | || |||||||| | ||| | |||||| |||||||||| || Sbjct 180094 AGCTGGGCCTGGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCT 180035 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 |||||||||||||||||||| | ||| ||| |||||||||| || || |||| || Sbjct 180034 TGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 179978 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || ||||||||||| || ||| ||||| |||| | |||| Sbjct 175547 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTGC 175488 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| ||| |||| || ||||||| ||| | |||||| ||| Sbjct 175487 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 175428 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 175427 TCCAGGTAGA 175418 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||| || || || || | ||| ||||| ||||||| || |||||||| Sbjct 182198 CACCTGGAACTCCCCAGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 182139 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| |||||||||| ||||| || ||| || || |||||||| || | || || Sbjct 182138 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTGGGCATGGGGGAGATGAGGAG 182079 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || | ||| Sbjct 182078 GCTGTTCCTCACTCCATACCT 182058 >seq2369 Length=237747 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 219976 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 220035 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 220036 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 220095 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 220096 ATTAGCAGAGATGAGG 220111 >seq2912 Length=3111161 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 1998464 GTAGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 1998405 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || |||||||||||||| || || Sbjct 1998404 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 1998345 Query 42828 GAGG 42831 |||| Sbjct 1998344 GAGG 1998341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944304578164080