Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2350 143 5e-29
seq2369 87.8 3e-12
seq2912 84.2 4e-11
>seq2350
Length=253660
Score = 143 bits (158), Expect = 5e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
||||||||||| | ||||||||| || ||||| ||||| ||||| |||||||||||||
Sbjct 176748 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 176689
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||
Sbjct 176688 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 176629
Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883
|| ||||| ||||| ||| || | || |||||| | | ||||| ||| ||
Sbjct 176628 TGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 176569
Query 244884 TGCGAGCCTTGCCCT-CTGCCTCGTAGC 244910
|||| | ||||| ||| ||||||||
Sbjct 176568 TGCGCACGCGGCCCTGCTG-CTCGTAGC 176542
Score = 143 bits (158), Expect = 5e-29
Identities = 178/237 (75%), Gaps = 5/237 (2%)
Strand=Plus/Minus
Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376
|| ||| |||||||| || ||||||||||| |||||| || | | | |||| |||
Sbjct 180212 CACCCCTTTGCTGACCGGAGAACCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 180154
Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436
||| |||||| | || ||||| |||||||||||||||| ||||| || ||| | |
Sbjct 180153 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGA-GC 180095
Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495
|| |||||| | || |||||||| | ||| | |||||| |||||||||| ||
Sbjct 180094 AGCTGGGCCTGGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCT 180035
Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551
|||||||||||||||||||| | ||| ||| |||||||||| || || |||| ||
Sbjct 180034 TGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 179978
Score = 100 bits (110), Expect = 5e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062
|| |||| ||||||||| || ||||||||||| || ||| ||||| |||| | ||||
Sbjct 175547 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTGC 175488
Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122
|| || || ||||||||| ||| |||| || ||||||| ||| | |||||| |||
Sbjct 175487 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 175428
Query 245123 TCCATGTAGA 245132
|||| |||||
Sbjct 175427 TCCAGGTAGA 175418
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155
|||||| ||||| || || || || | ||| ||||| ||||||| || ||||||||
Sbjct 182198 CACCTGGAACTCCCCAGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 182139
Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215
| ||| |||||||||| ||||| || ||| || || |||||||| || | || ||
Sbjct 182138 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTGGGCATGGGGGAGATGAGGAG 182079
Query 244216 ACTGTTCCTCACGCCGTGCCT 244236
||||||||||| || | |||
Sbjct 182078 GCTGTTCCTCACTCCATACCT 182058
>seq2369
Length=237747
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| |||||| | || || || ||||||||||| ||||| |||| ||
Sbjct 219976 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 220035
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
| || || ||||| ||| ||| || |||||| ||| | || ||||| || |||||
Sbjct 220036 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 220095
Query 42816 ATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 220096 ATTAGCAGAGATGAGG 220111
>seq2912
Length=3111161
Score = 84.2 bits (92), Expect = 4e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||||||| | || || || || |||||||| || ||| | || || || || || |||
Sbjct 1998464 GTAGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 1998405
Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
|| ||| | | | | ||||| |||||||| || || |||||||||||||| || ||
Sbjct 1998404 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 1998345
Query 42828 GAGG 42831
||||
Sbjct 1998344 GAGG 1998341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944304578164080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |