Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1659 167 3e-36
seq2613 116 5e-21
>seq1659
Length=6985037
Score = 167 bits (184), Expect = 3e-36
Identities = 217/300 (72%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| ||||| || ||| || | ||| ||| | || || |
Sbjct 4733503 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGACGAGCTTCTGCAGGGAGGCTG 4733444
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || |||||||| || || || | || |||||||||||||| ||||||||| | ||||
Sbjct 4733443 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 4733384
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | |||
Sbjct 4733383 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGCGCCCCCATCTCCACCATGG 4733324
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
|||| || |||||||| || || || || || || || | | || | ||| || || |
Sbjct 4733323 TCTCGCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGCCCTGGGTACAGCTCCA 4733264
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| |||| ||| || || || | |||| ||| || || |||||||| || ||| |||
Sbjct 4733263 TGGCGTCGATGTCCCCGTACAGCTCCTCCAGCTCCGCCGCCATCTCCTTTTCTCCTGCAA 4733204
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || || ||||| || || | ||||||||| |||| || ||||| | | | |||||
Sbjct 4731570 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGT 4731511
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
| |||||||| | |||||| || | |||||| || |||||||||||||| | ||||||
Sbjct 4731510 ATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 4731451
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | |||||||| || | |||||| | || |||| | |||||||| | ||| |
Sbjct 4731450 ACCAGCCCAAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGTGGG 4731391
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956
|||||||| | |||| || || || || || || ||||| || ||
Sbjct 4731390 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATCTCTCC 4731341
Score = 111 bits (122), Expect = 2e-19
Identities = 109/139 (78%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| ||| | |||||| ||||||| || |||||||| || || || |||||||||
Sbjct 4732649 TCAGGCAGCAGTGGGTGCCAGTGGTAGAGAGTGTTGAACTCAGCTGCGATGCGGTTCTGG 4732590
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|||||||| ||| |||||| | ||| |||||||| | |||| |||||||||||
Sbjct 4732589 TACTGAAACTTCTGGT--TGAACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACC 4732532
Query 9671 CGCTGAGTTGCTGGACATA 9689
| || || ||||| |||||
Sbjct 4732531 CACTCAGGTGCTGCACATA 4732513
>seq2613
Length=3979170
Score = 116 bits (128), Expect = 5e-21
Identities = 205/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
||||||| | |||| || |||||| ||| || | ||| || | || ||| |
Sbjct 1607727 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCTG 1607786
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || || || || || || | || || || || ||||||||||||||| ||||||
Sbjct 1607787 TCTTAACAATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCCGGGG 1607846
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| || | | ||||| |||| |||||| ||||| || | ||| | ||||
Sbjct 1607847 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1607906
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| || || || ||| | ||| | ||||| |||| | ||||| | ||| | || |
Sbjct 1607907 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCTGGGTAAAACTCCA 1607966
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
||| |||| ||| ||||| || |||||| ||| || || |||| | ||| ||| ||
Sbjct 1607967 GAGCATCGATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 1608025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723701466322200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |