Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1659 167 3e-36 seq2613 116 5e-21 >seq1659 Length=6985037 Score = 167 bits (184), Expect = 3e-36 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || | ||| ||| | || || | Sbjct 4733503 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGACGAGCTTCTGCAGGGAGGCTG 4733444 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 4733443 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 4733384 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | ||| Sbjct 4733383 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGCGCCCCCATCTCCACCATGG 4733324 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| || || || || || || || | | || | ||| || || | Sbjct 4733323 TCTCGCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGCCCTGGGTACAGCTCCA 4733264 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || |||||||| || ||| ||| Sbjct 4733263 TGGCGTCGATGTCCCCGTACAGCTCCTCCAGCTCCGCCGCCATCTCCTTTTCTCCTGCAA 4733204 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | ||||||||| |||| || ||||| | | | ||||| Sbjct 4731570 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGT 4731511 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | |||||||| | |||||| || | |||||| || |||||||||||||| | |||||| Sbjct 4731510 ATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 4731451 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | |||||||| || | |||||| | || |||| | |||||||| | ||| | Sbjct 4731450 ACCAGCCCAAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGTGGG 4731391 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 |||||||| | |||| || || || || || || ||||| || || Sbjct 4731390 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATCTCTCC 4731341 Score = 111 bits (122), Expect = 2e-19 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| ||||||| || |||||||| || || || ||||||||| Sbjct 4732649 TCAGGCAGCAGTGGGTGCCAGTGGTAGAGAGTGTTGAACTCAGCTGCGATGCGGTTCTGG 4732590 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| ||| |||||| | ||| |||||||| | |||| ||||||||||| Sbjct 4732589 TACTGAAACTTCTGGT--TGAACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACC 4732532 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || || ||||| ||||| Sbjct 4732531 CACTCAGGTGCTGCACATA 4732513 >seq2613 Length=3979170 Score = 116 bits (128), Expect = 5e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||| ||| || | ||| || | || ||| | Sbjct 1607727 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCTG 1607786 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | || || || || ||||||||||||||| |||||| Sbjct 1607787 TCTTAACAATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCCGGGG 1607846 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| |||| |||||| ||||| || | ||| | |||| Sbjct 1607847 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1607906 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| | ||| | ||||| |||| | ||||| | ||| | || | Sbjct 1607907 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCTGGGTAAAACTCCA 1607966 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| |||| ||| ||||| || |||||| ||| || || |||| | ||| ||| || Sbjct 1607967 GAGCATCGATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 1608025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723701466322200