Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2502 127 2e-24 >seq2502 Length=4400873 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || || || ||||| ||||||||||| || || || | Sbjct 928198 CGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA 928139 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| || | | ||||||||| | || | || |||||| Sbjct 928138 TCCTCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 928079 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| || | | |||||||| | ||||| || | |||||| Sbjct 928078 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATG 928019 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||||||||| || || || ||||| |||||||| Sbjct 928018 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 927981 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || || |||| || |||||| ||||| |||||||| || || || || | Sbjct 928794 CGCAAGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 928735 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || || || || |||| | ||||||||| | || | || ||||| Sbjct 928734 TCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 928675 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||| | | | ||||| || | || || |||| ||||| Sbjct 928674 TCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATT 928615 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || |||||||| ||||| Sbjct 928614 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 928580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565217676947160