Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 156 4e-33
seq2912 91.5 1e-13
seq2369 87.8 2e-12
>seq2502
Length=4400873
Score = 156 bits (172), Expect = 4e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||||||||| || ||||| || || || |||||||| ||||||||| | || || ||| |
Sbjct 927980 AAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCC 928039
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|| ||||| | | | | | || | || |||| ||||| || || || || | ||
Sbjct 928040 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 928099
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| ||||||||| ||| ||||| |||||||| || | || |||||| ||||||
Sbjct 928100 CCAGCAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTA 928159
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| || ||| | || ||||| |||||||||||
Sbjct 928160 CAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCG 928198
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| || ||||| | || |||||| |||
Sbjct 928580 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACAATCACTCTGGAAGTCGAGCCCAGT 928639
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | ||| | |||| || |||| || || || || || || | |||||
Sbjct 928640 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 928699
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || || ||||||||||| || | || ||||| |||||||||
Sbjct 928700 CAGAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 928759
Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446
||||| ||||| | || |||||
Sbjct 928760 ATCCAGAAGGAGTCAACTCTGCA 928782
>seq2912
Length=3111161
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454
||||||||| | ||||| || || |||||||| || |||||||| ||| |||||
Sbjct 2000888 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 2000947
Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509
|| || ||||| || || || || ||||||||||| || |||| ||||||||||
Sbjct 2000948 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 2001002
>seq2369
Length=237747
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || |
Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||||||||| || || || ||||||||||||| ||| || || || || || |
Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992
Query 133037 CCACCA 133042
| ||||
Sbjct 219991 CAACCA 219986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500154462414720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |