Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2502 105 4e-18 >seq2502 Length=4400873 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 928192 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCC 928133 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | |||||||| | || | || |||||||| Sbjct 928132 AGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 928073 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || || | ||| ||||| | Sbjct 928072 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTCT 928015 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || ||||| || ||||||||||| || Sbjct 928014 TGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 927981 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 928770 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGTTTCCCAGCAAAG 928711 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| |||||| | Sbjct 928710 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTT 928651 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || || || || ||||| || ||||| ||| Sbjct 928650 TCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATTGTCTTGCCCGTCAGGGTCTTGACA 928591 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 928590 AAGATCTGCAT 928580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621995667624