Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2912 114 1e-20 seq2369 111 2e-19 >seq2912 Length=3111161 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 1998341 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1998400 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 1998401 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 1998460 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 1998461 CTACTACACGTTCTCC 1998476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||||| |||||||||||||||||| |||||||| || || ||||| || || || Sbjct 2000066 TCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAG 2000125 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| | |||||||| || |||||||| Sbjct 2000126 AAACAACGAGCTTCTGTGATTTGTACTTC 2000154 >seq2369 Length=237747 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || || ||||||||||| || || || | Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 219991 CAACCACTCTCTCACC 219976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562088191686120