Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2912 114 1e-20
seq2369 111 2e-19
>seq2912
Length=3111161
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | ||| |||||||| || | |||||||| | ||||||||| |
Sbjct 1998341 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1998400
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| |
Sbjct 1998401 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 1998460
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| | ||||||
Sbjct 1998461 CTACTACACGTTCTCC 1998476
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299
||||||| |||||||||||||||||| |||||||| || || ||||| || || ||
Sbjct 2000066 TCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAG 2000125
Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| | |||||||| || ||||||||
Sbjct 2000126 AAACAACGAGCTTCTGTGATTTGTACTTC 2000154
>seq2369
Length=237747
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || || ||||||||||| || || || |
Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 219991 CAACCACTCTCTCACC 219976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562088191686120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |