Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2535 120 2e-22
seq2045 91.5 1e-13
>seq2535
Length=4254303
Score = 120 bits (132), Expect = 2e-22
Identities = 140/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| |||||||| ||||||||||||||||| || ||||| ||||| | ||
Sbjct 4137323 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCTAAATC 4137264
Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || |
Sbjct 4137263 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 4137205
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328
|||| ||||| || || || | ||||||||||||| ||||| || || || || || |
Sbjct 4137204 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 4137147
Query 30329 ACAG 30332
||||
Sbjct 4137146 ACAG 4137143
>seq2045
Length=838734
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| |||||||||||||| || | || || |||||| | | ||| | ||||| || ||
Sbjct 513547 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 513488
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || |||||||||||||||| ||||||| || |||
Sbjct 513487 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCGTTCTGTTTACCT 513440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408602993580809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |