Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2350 132 9e-26
seq314 89.7 1e-12
>seq2350
Length=253660
Score = 132 bits (146), Expect = 9e-26
Identities = 127/163 (78%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 176731 GTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 176672
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||||||||||| || ||||| ||||
Sbjct 176671 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGG 176612
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | || | |||||| | | |||||| |||||||
Sbjct 176611 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 176569
Score = 131 bits (144), Expect = 3e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|||||||| || || |||| ||| | | ||||||||| |||||| ||||||||||
Sbjct 180208 CCTTTGCTGACCGGAGAACCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 180149
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| |||| |||||| ||||||||||||| ||||| || | | ||||||| || |
Sbjct 180148 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGG 180089
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
|||| ||| | |||||| | | ||||| | ||| | || ||||| || || ||
Sbjct 180088 GCCTGGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCTTGCACG 180029
Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
|||||||||||||| | ||| | | |||| ||
Sbjct 180028 CCGATGCCGATGGGGCGGTGCCGCCGGTTGGA 179997
Score = 113 bits (124), Expect = 8e-20
Identities = 104/132 (79%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || || ||||| ||||| | ||| | ||| |||||||||||||||
Sbjct 182195 CTGGAACTCCCCAGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 182136
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||||||||| ||||| ||||| |||||| ||||||||||||||| | | ||||| ||
Sbjct 182135 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTGGGCATGGGGGAGATGAGGAGGCT 182076
Query 213038 GTTCCTCACTCC 213049
||||||||||||
Sbjct 182075 GTTCCTCACTCC 182064
Score = 96.9 bits (106), Expect = 6e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || |||| ||| || || ||||||||| |||| | | |
Sbjct 175547 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCTCTGGCTCGCTGC 175488
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || || | ||| || || || || || |||||||||||| ||||||||||
Sbjct 175487 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 175428
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 175427 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 175397
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
|||||||||||| |||||||| ||||| | | ||||| || ||||| | | |||
Sbjct 184353 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGATGGT 184294
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815
| ||||||||| ||||||||| |||||| ||| | || ||||| || || | | ||
Sbjct 184293 TTTCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCAGGAATCTCAGG 184234
Query 212816 GATGTTCTG 212824
|||||||||
Sbjct 184233 GATGTTCTG 184225
>seq314
Length=2530371
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026
||||| | |||||| |||||||||||||||| | |||||| ||||| | | ||| |||
Sbjct 1964841 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGGATGGTGTGGTCCTCCAGGTTCTTCTCTCTC 1964782
Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070
||||||| |||||||||| || || || |||||||||||
Sbjct 1964781 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTGGTTCTGTC 1964738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931498647678720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |