Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2335 235 6e-57 >seq2335 Length=5215980 Score = 235 bits (260), Expect = 6e-57 Identities = 611/923 (66%), Gaps = 10/923 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || ||| |||| |||| || || || |||||| Sbjct 1499857 AGATACAGAGCTTTGTGCCGCAAATATTCCTCCAAGCATTTTACTGCAAAAGGGTCAACA 1499916 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || || || ||||| || |||| ||||| ||| |||| ||||||| || |||| Sbjct 1499917 TCAGTATCAAACTTATTAGCAAACAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 1499973 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| ||||| ||||| || || |||| || ||||| | || Sbjct 1499974 CCTACTCCAAAAACACAGACAGAACGAATGTGAACTCCACTGCAGGGTGGGTAGGGCGCA 1500033 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||||||||| || ||||||||||||| ||||||||||| | ||| | |||| Sbjct 1500034 CCTTTGGACACGTCACCCTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATG 1500093 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || |||||| |||| || | || | || ||||| || || | || || | || Sbjct 1500094 TCAGAAAGGTCGTACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 1500151 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || ||||| |||| || || |||||||| || || || | ||| || ||||| | Sbjct 1500152 GAATTGTTGCCCATAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAATT 1500211 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || || |||| | || ||||| || | Sbjct 1500212 TAAGTATTTTACTGTTTTCTAGTACATATTCTACAAAGTTTCTGCTAACTACAAAATAGG 1500271 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || || | || || | |||||| || ||||| Sbjct 1500272 CACTGCCAGAAAAAACTGGAGTGCTGAGGGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 1500331 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | ||||||||||| || ||| | |||| Sbjct 1500332 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCCTTATTAACAGGCA 1500391 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 1500392 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCT 1500451 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| || | ||||| | ||| ||||| || | | Sbjct 1500452 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGATTTATTAGGTATTTCCAGTTTGAAC 1500511 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || || ||||||| ||||| ||||||||||| | |||||| ||||| | Sbjct 1500512 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCAT 1500571 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 1500572 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 1500631 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 || | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 1500632 TTACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTC 1500690 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || || ||||| | || || | || || | |||||| || || |||| | ||| Sbjct 1500691 TGTGGAGCATAGATTGATCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACT 1500750 Query 160929 ATAGAGTAGGCTATCGGAAACTC 160951 || ||||| || || ||||| || Sbjct 1500751 ATTGAGTAAGCAATTGGAAATTC 1500773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577198037701080