Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq2335 235 6e-57
>seq2335
Length=5215980
Score = 235 bits (260), Expect = 6e-57
Identities = 611/923 (66%), Gaps = 10/923 (1%)
Strand=Plus/Plus
Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091
|||| ||| | | |||| |||| || ||| |||| |||| || || || ||||||
Sbjct 1499857 AGATACAGAGCTTTGTGCCGCAAATATTCCTCCAAGCATTTTACTGCAAAAGGGTCAACA 1499916
Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151
|| || || ||||| || |||| ||||| ||| |||| ||||||| || ||||
Sbjct 1499917 TCAGTATCAAACTTATTAGCAAACAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 1499973
Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211
|| || || || ||||| ||||| ||||| || || |||| || ||||| | ||
Sbjct 1499974 CCTACTCCAAAAACACAGACAGAACGAATGTGAACTCCACTGCAGGGTGGGTAGGGCGCA 1500033
Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271
||||| | ||||||||| || ||||||||||||| ||||||||||| | ||| | ||||
Sbjct 1500034 CCTTTGGACACGTCACCCTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATG 1500093
Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329
|| || |||||| |||| || | || | || ||||| || || | || || | ||
Sbjct 1500094 TCAGAAAGGTCGTACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 1500151
Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
| | || ||||| |||| || || |||||||| || || || | ||| || ||||| |
Sbjct 1500152 GAATTGTTGCCCATAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAATT 1500211
Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449
||| |||| || || | || || |||| | || ||||| || |
Sbjct 1500212 TAAGTATTTTACTGTTTTCTAGTACATATTCTACAAAGTTTCTGCTAACTACAAAATAGG 1500271
Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509
| ||||| || || | || || | || || | |||||| || |||||
Sbjct 1500272 CACTGCCAGAAAAAACTGGAGTGCTGAGGGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 1500331
Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569
| || | | | | | || | ||||||||||| || ||| | ||||
Sbjct 1500332 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCCTTATTAACAGGCA 1500391
Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629
| ||| || || | ||||| |||| | || | ||| | | || || || ||
Sbjct 1500392 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCT 1500451
Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689
|||| ||||| | |||||||| |||| || | ||||| | ||| ||||| || | |
Sbjct 1500452 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGATTTATTAGGTATTTCCAGTTTGAAC 1500511
Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749
| || || || ||||||| ||||| ||||||||||| | |||||| ||||| |
Sbjct 1500512 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCAT 1500571
Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809
| || || |||||| | |||| | |||||| ||||| ||||| || || ||||||
Sbjct 1500572 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 1500631
Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868
|| | ||| || || || | | |||| ||| || || | ||| || | |||
Sbjct 1500632 TTACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTC 1500690
Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928
|| || || ||||| | || || | || || | |||||| || || |||| | |||
Sbjct 1500691 TGTGGAGCATAGATTGATCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACT 1500750
Query 160929 ATAGAGTAGGCTATCGGAAACTC 160951
|| ||||| || || ||||| ||
Sbjct 1500751 ATTGAGTAAGCAATTGGAAATTC 1500773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577198037701080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |