Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2357 297 3e-75 seq2502 181 1e-40 seq1191 100 4e-16 seq2266 98.7 1e-15 seq2613 91.5 2e-13 >seq2357 Length=5036361 Score = 297 bits (328), Expect = 3e-75 Identities = 1036/1597 (65%), Gaps = 37/1597 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || | | Sbjct 3895335 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCACGGCAAA 3895394 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || || || || Sbjct 3895395 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 3895454 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || || || || || || ||| ||| |||||||| | ||| Sbjct 3895455 GATACGGAGCGGCTCATCGGGGACGCTGCCAAGAACCAGGTAGCGATGAACCCCACCAAC 3895514 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || ||||| || || || ||||||| | || | || || Sbjct 3895515 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 3895574 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| ||| || || || || || ||||| | | | | Sbjct 3895575 GACATGAAGCACTGGCCTTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 3895631 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | ||| |||| || || || || |||||| | Sbjct 3895632 GTGGAGTACAAGGGGGAGATGAAG-ACTTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 3895690 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || |||| || ||| | |||| || Sbjct 3895691 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 3895749 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| ||| || || || ||||| || ||||| || | | | Sbjct 3895750 TCACGGTGCCGGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCACCA 3895809 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || ||||| || || || || ||||| ||||| ||| Sbjct 3895810 TCACCGGCCTCAA-TGTGATGCGTATCATCAACGAGCCCACTGCAGCTGCTATTGCCTAT 3895868 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| | || | ||| || || || | |||||||| || || Sbjct 3895869 GGCCTGGACAAGAAAGGAACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGA 3895928 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || || | ||| || ||||| |||||| | Sbjct 3895929 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTCGAGGTAAAGTCC 3895988 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || || || ||||| || || || || || | | || ||| Sbjct 3895989 ACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 3896048 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || || | || || | || | | Sbjct 3896049 GT-GGAAGAATTCAAGCGCAAGCACAAGCGTGACATCGCCGGCAACAAGCGAGCGGTGAG 3896107 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | || || || || || ||| || ||| || | Sbjct 3896108 GCGGCTGCGCACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCCTCCACG---CAGGC 3896164 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || | ||||| || ||||||||||| || | || || ||||| Sbjct 3896165 CAGCATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACCTCCATCACKCGTGC 3896224 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 |||||||| ||| | || | || | || | |||| || || || | | Sbjct 3896225 CCGTTTTGAGGAGCTCAATGCCGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 3896284 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || |||||||| ||| | || ||| || | | || ||||| || ||||| || || Sbjct 3896285 TCTGCGTGACGCCAAGCTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTC 3896344 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365 ||||| || || ||||| || || |||| ||||||||| |||||| | || Sbjct 3896345 TACCCGCATCCCCAAGATCCAGAAGCTGCTACAGGATTTCTTCAATGGTAAAGAGCTCAA 3896404 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | ||||| || ||||| || || |||||||| || ||||| || || ||||| Sbjct 3896405 CAAGAGCATCAATCCTGATGAGGCTGTGGCTTATGGCGCTGCCGTACAAGCAGCTAT--C 3896462 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 |||| | | ||||| | | ||||| || ||||| ||||| | ||||| | || | Sbjct 3896463 CTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCT 3896521 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 |||||||| | || || || || || || ||||| | || | | ||||| || Sbjct 3896522 GTCCCTGGGCATCGAGACGGCTGGAGGAGTGATGACCGCTCTCATCAAGCGCAACACCAC 3896581 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTC 196601 || || || || | || ||| | || || || || || || | || | || | Sbjct 3896582 CATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCC 3896640 Query 196602 ATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAA 196658 | || || || |||| |||| ||| || ||| ||||||| || | || || | Sbjct 3896641 TGGTCCAGGTGTAYGAAGGTGAGAGGGCT---ATGACAAGGGATAACAATTTGCTGGGCA 3896697 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 || || | || || || || | |||||| | || || |||||||| | || | Sbjct 3896698 AGTTTGACCTAACAGGCATCCCCCCAGCACCCCGGGGAGTCCCACAGATCGAGGTCACTT 3896757 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 | || || || || || || || || ||||||| |||| ||||||| | || || Sbjct 3896758 TTGACATCGATGCCAACGGTATCCTGAACGTCAGTGCTGTGGACAAGAGCACGGGGAAGG 3896817 Query 196779 CTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 | ||||| || ||||| |||||||| || || ||||| || || || |||| Sbjct 3896818 AGAACAAGATCACCATCACCAACGACAAGGGTCGCCTCAGCAAGGACGACATCGACCGTA 3896877 Query 196839 TGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||| ||||| || || ||||||| | ||| || || Sbjct 3896878 TGGTGCAAGAGGCAGAGAAGTACAAAGCAGAGGATGA 3896914 >seq2502 Length=4400873 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || ||||| || || || ||| | Sbjct 928580 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACAATCACTCTGGAAGTCGAGCCCAGT 928639 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || ||||||||||||| || |||||||||||||| || || || ||| Sbjct 928640 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 928699 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| |||||||| || ||||| |||||||| |||| |||||| Sbjct 928700 CAGAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 928759 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||||| |||||||| | | || ||||||||| Sbjct 928760 ATCCAGAAGGAGTCAACTCTGCACCTTGTCTTGCGCCTGCGGGGTGGT 928807 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| ||||| ||| | Sbjct 927984 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCCAGC 928043 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 928044 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 928103 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| || ||||| ||||||||| | || |||||| Sbjct 928104 CAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAAC 928163 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || || || || ||||| ||| | || || Sbjct 928164 ATCCAGAAAGAATCCACTCTGCACTTGGTGCT 928195 >seq1191 Length=1474021 Score = 100 bits (110), Expect = 4e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| || || || || ||||| ||||| |||| Sbjct 1461983 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACAAAAGACG 1462042 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | || || || || ||| || | || |||||||| || ||||| ||||| | Sbjct 1462043 CTGGAACCATYGCAGGGCTCAACGTCCTGCGGATCATCAATGAGCCCACAGCTGCTGCCA 1462102 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| || || ||||||||||| Sbjct 1462103 TTGCCTACGGGCTGGACAAGAA 1462124 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 || || ||| |||| |||||| | | |||| ||||| || ||||||||||| || ||| Sbjct 1462618 GATGCCAAGCTGGACAAGTCTCAAATCCATGACATTGTGCTGGTGGGAGGATCCACTCGT 1462677 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || || ||||| || || |||| ||||||||| ||||| | ||||| | Sbjct 1462678 ATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGCAAAGAGCTCAACAAGAGT 1462737 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 |||||||| ||||| || || || ||||| || Sbjct 1462738 ATCAACCCTGATGAGGCTGTGGCRTATGGAGC 1462769 >seq2266 Length=420336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| ||| | Sbjct 142670 ATGCAGATCTTCGTGAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 142729 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | |||||||| || || || |||||||| Sbjct 142730 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAAGG 142773 >seq2613 Length=3979170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||| ||||||||||| |||||||||| ||| | ||| || || || Sbjct 806980 AACTGCTGCTGCCATTGCTTATGGACTGGACAAGAGAGAGG-GGGAGAAGAACAT-CCTT 807037 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | || || || |||||||| || |||||||| || || |||| ||||| ||| | Sbjct 807038 G-TGTTCGACCTGGGTGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAATGGAGT 807096 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| | ||||| ||||| || || Sbjct 807097 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACTTGGGTGGAGAAGACTTTGA 807150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657838281119760