Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1180 161 1e-33 seq1439 120 4e-21 seq2350 116 5e-20 seq2391 104 3e-16 seq2912 102 1e-15 seq2753 89.7 6e-12 seq847 86.0 8e-11 >seq1180 Length=1499208 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 1474730 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1474671 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 1474670 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 1474611 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 1474610 TGTCGTTGACGAAGGAGTTCATGATGCYCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 1474551 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1474550 GCACCTGCTTCAGCACCTTGTA 1474529 Score = 125 bits (138), Expect = 9e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| Sbjct 1470615 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAA 1470674 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 1470675 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1470734 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 1470735 GTGCACCTGCTTCAGCACCTTGTA 1470758 >seq1439 Length=7134548 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| || | || Sbjct 5622317 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGATGTGA 5622376 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| ||| || | ||||| || | | Sbjct 5622377 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 5622436 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||||||| ||| || | Sbjct 5622437 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGAT 5622496 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 5622497 GGACCTGCTTCAGCACCTTGTAGA 5622520 >seq2350 Length=253660 Score = 116 bits (128), Expect = 5e-20 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||||||| || | | || |||||||||||||||||| | || Sbjct 176722 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 176663 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 176662 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 176603 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 176602 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 176554 Score = 109 bits (120), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||||||||| |||||||||||||| || ||||| || || ||||||| Sbjct 174157 CGGCGAGGCCGATGCCGCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 174098 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||||||||| |||| |||||||| || || ||||| Sbjct 174097 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 174055 >seq2391 Length=4963937 Score = 104 bits (114), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 |||||| | ||||||| |||| ||||||||||| || |||||||||| ||| | | Sbjct 4958448 GCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCC 4958507 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 4958508 TTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 4958554 >seq2912 Length=3111161 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 2000888 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 2000947 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| |||||| || |||| ||| || || Sbjct 2000948 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 2001001 >seq2753 Length=34300 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 19117 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 19176 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || || ||| || ||||| |||| || |||||| |||||||| Sbjct 19177 CATGACCTCGCGGGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 19228 Score = 87.8 bits (96), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | ||| || | | || ||| | Sbjct 9502 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGGCTSACCCCGACAGAGTTC 9561 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || |||||||||||||| ||| ||||||| ||||| || || |||||| Sbjct 9562 TTCTTCCACGCCATGGGCGGGCGCGAGGGGCTCATCGACACCGCCGTGAAAACCGCCGAG 9621 Query 509156 ACGGG 509160 ||||| Sbjct 9622 ACGGG 9626 >seq847 Length=1744206 Score = 86.0 bits (94), Expect = 8e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| || ||||| || || || | ||| |||| ||||| |||||| || || Sbjct 1472581 CTGGTAATCAGTGCCCCGGACGAATTTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCAG 1472522 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||| |||||| || |||||| | ||| || | || | ||| ||||| || | Sbjct 1472521 CATGGCTTTGATGACATGCTCGTAGTAACGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 1472462 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 ||| |||||| |||| ||| || | ||| ||||||||||| Sbjct 1472461 CTTCATGTTGTCCAGGTAGGCATGGAGGTCAGCAAAGAGGAT 1472420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106898504284761