Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 161 1e-33
seq1439 120 4e-21
seq2350 116 5e-20
seq2391 104 3e-16
seq2912 102 1e-15
seq2753 89.7 6e-12
seq847 86.0 8e-11
>seq1180
Length=1499208
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 1474730 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1474671
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 1474670 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 1474611
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct 1474610 TGTCGTTGACGAAGGAGTTCATGATGCYCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 1474551
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1474550 GCACCTGCTTCAGCACCTTGTA 1474529
Score = 125 bits (138), Expect = 9e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
||| ||| ||||||||| |||||||||| || |||||| | ||||||| ||||
Sbjct 1470615 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAA 1470674
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
||||||||||| || |||||||||| ||| | |||| ||||||||| ||||||
Sbjct 1470675 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1470734
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
|||||||||||| |||||||||||
Sbjct 1470735 GTGCACCTGCTTCAGCACCTTGTA 1470758
>seq1439
Length=7134548
Score = 120 bits (132), Expect = 4e-21
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||||||||| || | ||
Sbjct 5622317 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGATGTGA 5622376
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||||||| | || ||||| ||| ||| || | ||||| || | |
Sbjct 5622377 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 5622436
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||||||| ||| | |||| |||||||||| ||| || |
Sbjct 5622437 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGAT 5622496
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 5622497 GGACCTGCTTCAGCACCTTGTAGA 5622520
>seq2350
Length=253660
Score = 116 bits (128), Expect = 5e-20
Identities = 127/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
|||||||| |||||||||||| || | | || |||||||||||||||||| | ||
Sbjct 176722 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 176663
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| |
Sbjct 176662 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 176603
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
||||| |||||| ||| | || ||| || | ||| |||||||||
Sbjct 176602 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 176554
Score = 109 bits (120), Expect = 7e-18
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||||||||||||||| |||||||||||||| || ||||| || || |||||||
Sbjct 174157 CGGCGAGGCCGATGCCGCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 174098
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277
||||||||||||| |||| |||||||| || || |||||
Sbjct 174097 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 174055
>seq2391
Length=4963937
Score = 104 bits (114), Expect = 3e-16
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497
|||||| | ||||||| |||| ||||||||||| || |||||||||| ||| | |
Sbjct 4958448 GCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCC 4958507
Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct 4958508 TTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 4958554
>seq2912
Length=3111161
Score = 102 bits (112), Expect = 1e-15
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 2000888 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 2000947
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| |||||| |||||| || |||| ||| || ||
Sbjct 2000948 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 2001001
>seq2753
Length=34300
Score = 89.7 bits (98), Expect = 6e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| |||||| ||||||||||| |||| ||| | |||||| ||||||
Sbjct 19117 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 19176
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| || || ||| || ||||| |||| || |||||| ||||||||
Sbjct 19177 CATGACCTCGCGGGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 19228
Score = 87.8 bits (96), Expect = 2e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | ||| || | | || ||| |
Sbjct 9502 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGGCTSACCCCGACAGAGTTC 9561
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || |||||||||||||| ||| ||||||| ||||| || || ||||||
Sbjct 9562 TTCTTCCACGCCATGGGCGGGCGCGAGGGGCTCATCGACACCGCCGTGAAAACCGCCGAG 9621
Query 509156 ACGGG 509160
|||||
Sbjct 9622 ACGGG 9626
>seq847
Length=1744206
Score = 86.0 bits (94), Expect = 8e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431
|||||| || ||||| || || || | ||| |||| ||||| |||||| || ||
Sbjct 1472581 CTGGTAATCAGTGCCCCGGACGAATTTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCAG 1472522
Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491
|||||| |||||| || |||||| | ||| || | || | ||| ||||| || |
Sbjct 1472521 CATGGCTTTGATGACATGCTCGTAGTAACGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 1472462
Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533
||| |||||| |||| ||| || | ||| |||||||||||
Sbjct 1472461 CTTCATGTTGTCCAGGTAGGCATGGAGGTCAGCAAAGAGGAT 1472420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106898504284761
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |