Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2502 134 1e-26 >seq2502 Length=4400873 Score = 134 bits (148), Expect = 1e-26 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 928579 GATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACAATCACTCTGGAAGTCGAGCCCAG 928638 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| |||||||| || || ||||| || ||||| || || Sbjct 928639 TGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 928698 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| |||||||||||||||||| | | | |||| || || || Sbjct 928699 GCAGAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAA 928758 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| || || || ||| | || ||||| |||| || | | |||||| || Sbjct 928759 CATCCAGAAGGAGTCAACTCTGCACCTTGTCTTGCGCCTGCGGGGTG--GTAACTGAACC 928816 Query 24943 A 24943 | Sbjct 928817 A 928817 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 927984 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCCAGC 928043 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||| || || Sbjct 928044 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 928103 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || || || || |||||||||||| | | | | || || || ||| Sbjct 928104 CAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAAC 928163 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||||||||| |||| Sbjct 928164 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCG 928198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881105629240