Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1180 219 7e-51 seq1439 174 2e-37 seq2307 138 2e-26 seq2912 109 9e-18 seq2391 107 3e-17 seq2350 105 1e-16 seq2753 87.8 3e-11 seq847 86.0 1e-10 >seq1180 Length=1499208 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1474769 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 1474710 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 1474709 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 1474650 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 1474649 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1474590 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1474589 TGATGCYCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1474530 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 1474529 ACACGTAGATCGAGTA 1474514 Score = 125 bits (138), Expect = 1e-22 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | |||||||||| |||||| | ||||||| |||| Sbjct 1470615 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAA 1470674 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 ||||||||||| || ||||||||||| ||| | ||| ||||||||| |||||| Sbjct 1470675 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1470734 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||||||||| ||||||||||| || || |||||| Sbjct 1470735 GTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 1470773 Score = 118 bits (130), Expect = 2e-20 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1485827 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 1485886 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 1485887 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 1485946 Query 1485590 GCGCCAGG 1485597 |||||||| Sbjct 1485947 GCGCCAGG 1485954 >seq1439 Length=7134548 Score = 174 bits (192), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || || | | Sbjct 5622278 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCCGGGA 5622337 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| |||||||| Sbjct 5622338 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGATGTGATGGTGGAACGCTTGTTGTAAT 5622397 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||| ||||| || ||||||| Sbjct 5622398 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 5622457 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| || || |||||||| |||||||||| Sbjct 5622458 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGATGGACCTGCTTCAGCACCTTGT 5622517 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 5622518 AGACATAGATGGAGTA 5622533 >seq2307 Length=329114 Score = 138 bits (152), Expect = 2e-26 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 201472 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGCA 201531 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||| ||||| | ||| ||| || ||| ||| || | | | || | Sbjct 201532 GCAGGAGCCTGGTGGCCGTCTGCACCTCACGGCTGGTGATGGTGGCACGGTGGCT-GTAC 201590 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | | ||| || | |||||| |||||||| |||||| Sbjct 201591 TGGGCCAGGCGCGAGGCCTCCGAGGCCAGGCGCTCAAACATGTCATTGACAAAGGAGTTC 201650 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||| | | ||| |||||||||||| Sbjct 201651 ATGATGCTCATGGCCTTGGAGGAGATGGCGAGGTCTGGGTGCACCTGC 201698 >seq2912 Length=3111161 Score = 109 bits (120), Expect = 9e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 2000889 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 2000948 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || ||||||||||| Sbjct 2000949 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 2001001 >seq2391 Length=4963937 Score = 107 bits (118), Expect = 3e-17 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| | ||||||| |||| ||||||||||| || ||||||||||| ||| | Sbjct 4958448 GCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCC 4958507 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAG 1485723 ||| ||||||||| |||||||||||||||||| ||||||||||| || || |||| Sbjct 4958508 TTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAG 4958567 Query 1485724 TA 1485725 || Sbjct 4958568 TA 4958569 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 4894505 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 4894446 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | ||| |||||||| ||||| Sbjct 4894445 GCAGCAGCCGCACGGCCGTCTG 4894424 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 4907049 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 4907108 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | ||| |||||||| ||||| Sbjct 4907109 GCAGCAGCCGCACGGCCGTCTG 4907130 >seq2350 Length=253660 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||||||||||||| | |||||||||||| || |||| ||||| || |||| Sbjct 174157 CGGCGAGGCCGATGCCGCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 174098 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||||| |||| |||||||| || ||| ||||| Sbjct 174097 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 174055 Score = 96.9 bits (106), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||||||| || | ||||||||||||||||||||||||| || Sbjct 176722 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 176663 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || ||||| |||| | | || | Sbjct 176662 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 176603 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 176602 ATGGCGTACCA 176592 >seq2753 Length=34300 Score = 87.8 bits (96), Expect = 3e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | ||| || | | || ||| | Sbjct 9502 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGGCTSACCCCGACAGAGTTC 9561 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || |||||||||||||| ||| ||||||| ||||| || || |||||| Sbjct 9562 TTCTTCCACGCCATGGGCGGGCGCGAGGGGCTCATCGACACCGCCGTGAAAACCGCCGAG 9621 Query 431142 ACGGG 431146 ||||| Sbjct 9622 ACGGG 9626 >seq847 Length=1744206 Score = 86.0 bits (94), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 |||||||||| |||| || || |||| ||| ||||| || || || ||| || | Sbjct 1472582 GCTGGTAATCAGTGCCCCGGACGAATTTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCA 1472523 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||| |||||| || |||||| | ||| || |||| | || ||||| || | Sbjct 1472522 GCATGGCTTTGATGACATGCTCGTAGTAACGGGTGCGCAGCTCCAGCAGCTCCCAGGGAG 1472463 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 ||| ||||| |||| ||| || | ||| ||||||||||| ||||| Sbjct 1472462 CCTTCATGTTGTCCAGGTAGGCATGGAGGTCAGCAAAGAGGATTGTCACC 1472413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915934403412587